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Liquid Nuclear Condensates Mechanically Sense and Restructure the Genome.

Cell. 2018; 
Shin Y, Chang YC, Lee DSW, Berry J, Sanders DW, Ronceray P, Wingreen NS, Haataja M, Brangwynne CP.
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Plasmid DNA Preparation Continued REAGENT or RESOURCE SOURCE IDENTIFIER Plasmid: HSF1-GFPN3 Stuart Calderwood Addgene plasmid #32538 Plasmid: pcDNA5-F-AF9 Joan Conaway Addgene plasmid #49428 Plasmid: pFRT/TO/HIS/FLAG/HA-SART1 Markus Landthaler Addgene plasmid #38087 Plasmid: pDONR221-TAF15 No Stop Aaron Fitler Addgene plasmid #84896 Plasmid: pRRL_SRSF2_WT_mCherry Robert Bradley Addgene plasmid #84020 Plasmid: pSplit2-NO-PRPF6 Hiroyoshi Ariga Addgene plasmid #51740 Plasmid: p6344 pcDNA4-TO-HA-Brd4FL Peter Howley Addgene plasmid #31351 Plasmid: FM5-TAF15WT-mCherry Marc Diamond Lab, UT Southwestern N/A Coding sequence: RNPS1 GenScript N/A Plasmid: pHR-pSFFV-dCas9-SunTag-P2A-BFP-dWPRE This study N/A Plasmid: pHR-scFv-sfGFP-GB1-NLS-iLID-dWPRE This study N/A Plasmid: pHR-pSFFV-FUSN-mCherry-sspB This study N/A Plasmid: pHR-pSFFV-TAF15N-mCherry-sspB Plasmid: pHR-pSFFV-BRD4DN-mCherry-sspB This study N/A This study N/A Plasmid: pLV-sgTel This study N/A Plasmid: pLV-sgMaj This study N/A Plasmid: pHR-FUSN-miRFP670-Cry2WT This study N/A Plasmid: pHR-TAF15N-miRFP670-Cry2WT Plasmid: pHR-BRD4DN-miRFP670-Cry2WT Plasmid: pHR-HP1a-miRFP670-Cry2WT Plasmid: pHR-miRFP670-Cry2WT-HP1a This study N/A This study N/A This study N/A This study N/A Plasmid: FM5-CCNT1-EYFP This study N/A Plasmid: FM5-HSF1-EYFP This study N/A Plasmid: FM5-MLLT3-EYFP This study N/A Plasmid: FM5-RNPS1-EYFP This study N/A Plasmid: FM5-SART1-EYFP This study N/A Plasmid: FM5-TAF15-EYFP This study N/A Plasmid: FM5-TAF15-mCherry-Cry2WT Plasmid: FM5-SRSF2IDR-mCherry-Cry2WT This study N/A This study N/A Plasmid: FM5-RNPS1-mCherry-Cry2WT This study N/A Software and Algorithms MATLAB MathWorks https://www.... All open reading frames were PCRed from recombinant DNA vectors obtained from AddGene: CCNT1 (14607), HSF1 (32538), MLLT3 (49428), SART1 (38087), TAF15 (84896), SRSF2 (84020), PRPF6 (51740), with the exception of RNPS1, which was synthesized by GenScript. Get A Quote

摘要

Phase transitions involving biomolecular liquids are a fundamental mechanism underlying intracellular organization. In the cell nucleus, liquid-liquid phase separation of intrinsically disordered proteins (IDPs) is implicated in assembly of the nucleolus, as well as transcriptional clusters, and other nuclear bodies. However, it remains unclear whether and how physical forces associated with nucleation, growth, and wetting of liquid condensates can directly restructure chromatin. Here, we use CasDrop, a novel CRISPR-Cas9-based optogenetic technology, to show that various IDPs phase separate into liquid condensates that mechanically exclude chromatin as they grow and preferentially form in low-density, largely e... More

关键词

chromatin; condensates; gene regulation; mechanobiology; nuclear mechanics; nuclear organization; optogenetics; phase immiscibility; phase separation