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A new virus discovered by immunocapture of double-stranded RNA, a rapid method for virus enrichment in metagenomic studies.

Mol Ecol Resour. 2016; 
BlouinArnaud G,RossHoward A,Hobson-PetersJody,O'BrienCaitlin A,WarrenBen,MacDiarmidR
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Gene Synthesis … One microliter of a 100 μl RT reaction that had dsRNA extracted from the equivalent of 1 g of tissue as template, was added to a 25 μl PCR reaction using Taq polymerase (GenScript, NJ) according to manufacturer's instructions, and primers at 0.4 μM each (Table 1). The … Get A Quote

摘要

Next-generation sequencing technologies enable the rapid identification of viral infection of diseased organisms. However, despite a consistent decrease in sequencing costs, it is difficult to justify their use in large-scale surveys without a virus sequence enrichment technique. As the majority of plant viruses have an RNA genome, a common approach is to extract the double-stranded RNA (dsRNA) replicative form, to enrich the replicating virus genetic material over the host background. The traditional dsRNA extraction is time-consuming and labour-intensive. We present an alternative method to enrich dsRNA from plant extracts using anti-dsRNA monoclonal antibodies in a pull-down assay. The extracted dsRN... More

关键词

NGS,antibodies,dsRNA,metagenomics,plant v