Valeriana fauriei is commonly used in the treatment of cardiovascular diseases in many countries. Several constituents with various pharmacological properties are present in the roots of Valeriana species. Although many researches on V. fauriei have been done since a long time， further studies in the discipline make a limit due to inadequate genomic information. Hence， Illumina HiSeq 2500 system was conducted to obtain the transcriptome data from shoot and root of V. fauriei.
Valeriana fauriei is commonly used in the treatment of cardiovascular diseases in many countries. Several constituents with various pharmacological properties are present in the roots of Valeriana species. Although many researches on V. fauriei have been done since a long time， further studies in the discipline make a limit due to inadequate genomic information. Hence， Illumina HiSeq 2500 system was conducted to obtain the transcriptome data from shoot and root of V. fauriei.
